Tools for computation on batch systems

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

slurmR: A Lightweight Wrapper for Slurm

Submit R code to a Slurm cluster

R functions for project setup, data cleaning, machine learning, SuperLearner, parallelization, and targeted learning.

SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage

🚀 R package future.clustermq: A Future API for Parallel Processing using 'clustermq'

🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]

Workshop on HPC with Slurm, R, and the slurmR package

RNA-seq alignment and analysis pipeline

Tutorial on the Mercury Computing Cluster

🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

Helper functions for working with SLURM from R

Repo to demonstrate how to launch parallelized array job in Slurm

Testing parallel file creation using SLURM

Intermedate Slurm Workshop source code using the Software Carpentry Workbench style.

R package for talking to the HPC cluster at the University of Cologne

Scripts to Install R packages on the NeSI Pan Cluster

Convert Mass Spectrometry Files using msconvert, singularity and SLURM

Generate slurm job "containers" for your R code.